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Publications

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Benchmarking large-scale single-cell RNA-seq analysis.

October 2025 | bioRxiv

Bioconductor’s Computational Ecosystem for Genomic Data Science in Cancer.

August 2025 | Methods in Molecular Biology

Human mitochondrial DNA in public metagenomes: Opportunity or privacy threat?

May 2025 | Cell

Lefser: Implementation of metagenomic biomarker discovery tool, LEfSe, in R.

November 2024 | Bioinformatics

Large-scale metagenomic analysis of oral microbiomes reveals markers for autism spectrum disorders.

November 2024 | Nature Communications

Best practices to evaluate the impact of biomedical research software-metric collection beyond citations.

August 2024 | Bioinformatics

Integrated annotation prioritizes metabolites with bioactivity in inflammatory bowel disease.

March 2024 | Molecular Systems Biology

Longitudinal gut microbiome changes in immune checkpoint blockade-treated advanced melanoma.

February 2024 | Nature Medicine

International Society for Extracellular Vesicles Workshop. QuantitatEVs: multiscale analyses, from bulk to single extracellular vesicle.

January 2024 | Journal of Extracellular Biology

Machine learning for microbiologists.

November 2023 | Nature Reviews Microbiology
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The CUNY Institute for Implementation Science in Population Health (ISPH) was founded on the notion that substantial improvements in population health can be efficiently achieved through better implementation of existing strategies, policies, and interventions across multiple sectors. We study how to translate and scale-up evidence-based interventions and policies within clinical and community settings in order to improve population health and reduce health disparities. CUNY ISPH. Pursing population health gains through better implementation.

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