Publications

Spatial transcriptomics of healthy and fibrotic human liver at single-cell resolution.

January 2025 | Nature Communications

Thyroid hormone remodels cortex to coordinate body-wide metabolism and exploration.

August 2024 | Cell

Integrated annotation prioritizes metabolites with bioactivity in inflammatory bowel disease.

March 2024 | Molecular Systems Biology

BugSigDB captures patterns of differential abundance across a broad range of host-associated microbial signatures.

September 2023

Curated single cell multimodal landmark datasets for R/Bioconductor.

August 2023 | PLoS Computational Biology

Thyroid hormone rewires cortical circuits to coordinate body-wide metabolism and exploratory drive.

August 2023

RaggedExperiment: the missing link between genomic ranges and matrices in Bioconductor.

May 2023 | Bioinformatics

BioPlexR and BioPlexPy: integrated data products for the analysis of human protein interactions.

March 2023 | Bioinformatics

GenomicSuperSignature facilitates interpretation of RNA-seq experiments through robust, efficient comparison to public databases.

June 2022 | Nature Communications

Reporting guidelines for human microbiome research: the STORMS checklist.

November 2021 | Nature Medicine